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1

Probing nascent structures in peptides using natural abundance 13C NMR relaxation and reduced spectral density mapping

Carolyn M. Slupsky, Leo Spyracopoulos, Valerie K. Booth, Brian D. Sykes, Matthew P. Crump

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 557 KB

english, 2007

2

Backbone dynamics of an alamethicin in methanol and aqueous detergent solution determined by heteronuclear1H−15N NMR spectroscopy

Leo Spyracopoulos, Adelinda A. Yee, Joe D. J. O'Neil

Journal:

Journal of Biomolecular NMR

Year:

1996

Language:

english

File:

PDF, 1.29 MB

english, 1996

3

Structural Basis for Non-Covalent Interaction Between Ubiquitin and the Ubiquitin Conjugating Enzyme Variant Human MMS2

Michael J. Lewis, Linda F. Saltibus, D. Duong Hau, Wei Xiao, Leo Spyracopoulos

Journal:

Journal of Biomolecular NMR

Year:

2006

Language:

english

File:

PDF, 628 KB

english, 2006

4

A suite ofMathematicanotebooks for the analysis of protein main chain15N NMR relaxation data

Leo Spyracopoulos

Journal:

Journal of Biomolecular NMR

Year:

2006

Language:

english

File:

PDF, 385 KB

english, 2006

5

UBE4B promotes Hdm2-mediated degradation of the tumor suppressor p53

Wu, Hong, Pomeroy, Scott L, Ferreira, Manuel, Teider, Natalia, Mariani, Juliana, Nakayama, Keiichi I, Hatakeyama, Shigetsugu, Tron, Victor A, Saltibus, Linda F, Spyracopoulos, Leo

Journal:

Nature Medicine

Year:

2011

Language:

english

File:

PDF, 1.25 MB

english, 2011

6

Backbone dynamics of a bacterially expressed peptide from the receptor binding domain of Pseudomonas aeruginosa pilin strain PAK from heteronuclear 1H-15N NMR spectroscopy

A. Patricia Campbell, Leo Spyracopoulos, Randall T. Irvin, Brian D. Sykes

Journal:

Journal of Biomolecular NMR

Year:

2000

Language:

english

File:

PDF, 252 KB

english, 2000

7

Letter to the Editor: Complete1H,13C and15N backbone assignments for the hepatitis A virus 3C protease

Trent C. Bjorndahl, M. Scott Watson, Carolyn M. Slupsky, Leo Spyracopoulos, Brian D. Sykes, David S. Wishart

Journal:

Journal of Biomolecular NMR

Year:

2001

Language:

english

File:

PDF, 49 KB

english, 2001

8

Structure, interactions, and dynamics of the RING domain from human TRAF6

Pascal Mercier, Michael J. Lewis, D. Duong Hau, Linda F. Saltibus, Wei Xiao, Leo Spyracopoulos

Journal:

Protein Science

Year:

2007

Language:

english

File:

PDF, 571 KB

english, 2007

9

Backbone dynamics of the human cc chemokine eotaxin: Fast motions, slow motions, and implications for receptor binding

Matthew P. Crump, Leo Spyracopoulos, Pierre Lavigne, Key-Sun Kim, Ian Clark-Lewis, Brian D. Sykes

Journal:

Protein Science

Year:

1999

Language:

english

File:

PDF, 849 KB

english, 1999

10

Increased precision for analysis of protein–ligand dissociation constants determined from chemical shift titrations

Craig J. Markin, Leo Spyracopoulos

Journal:

Journal of Biomolecular NMR

Year:

2012

Language:

english

File:

PDF, 1.03 MB

english, 2012

11

Thermodynamic insights into proteins from NMR spin relaxation studies

Leo Spyracopoulos, Brian D. Sykes

Journal:

Current Opinion in Structural Biology

Year:

2001

Language:

english

File:

PDF, 83 KB

english, 2001

12

Backbone and methyl dynamics of the regulatory domain of troponin C: anisotropic rotational diffusion and contribution of conformational entropy to calcium affinity

Stéphane M. Gagné, Sakae Tsuda, Leo Spyracopoulos, Lewis E. Kay, Brian D. Sykes

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 580 KB

english, 1998

13

Context-Dependent Remodeling of Structure in Two Large Protein Fragments

Matthew J. Schellenberg, Dustin B. Ritchie, Tao Wu, Craig J. Markin, Leo Spyracopoulos, Andrew M. MacMillan

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.38 MB

english, 2010

14

Spruce Budworm Antifreeze Protein: Changes in Structure and Dynamics at Low Temperature

Steffen P. Graether, Stéphane M. Gagné, Leo Spyracopoulos, Zongchao Jia, Peter L. Davies, Brian D. Sykes

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 2.19 MB

english, 2003

15

Two Mms2 residues cooperatively interact with ubiquitin and are critical for Lys63 polyubiquitination in vitro and in vivo

Landon Pastushok, Leo Spyracopoulos, Wei Xiao

Journal:

Year:

2007

Language:

english

File:

PDF, 445 KB

english, 2007

16

Accuracy and precision of protein–ligand interaction kinetics determined from chemical shift titrations

Craig J. Markin, Leo Spyracopoulos

Journal:

Journal of Biomolecular NMR

Year:

2012

Language:

english

File:

PDF, 1.72 MB

english, 2012

17

Structure and Dynamics of a β-Helical Antifreeze Protein †,‡

Daley, Margaret E., Spyracopoulos, Leo, Jia, Zongchao, Davies, Peter L., Sykes, Brian D.

Journal:

Year:

2002

Language:

english

File:

PDF, 314 KB

english, 2002

18

Binding of Cardiac Troponin-I 147-163 Induces a Structural Opening in Human Cardiac Troponin-C †,‡

Li, Monica X., Spyracopoulos, Leo, Sykes, Brian D.

Journal:

Year:

1999

Language:

english

File:

PDF, 161 KB

english, 1999

19

Temperature Dependence of Dynamics and Thermodynamics of the Regulatory Domain of Human Cardiac Troponin C †

Spyracopoulos, Leo, Lavigne, Pierre, Crump, Matthew P., Gagné, Stéphane M., Kay, Cyril M., Sykes, Brian D.

Journal:

Year:

2001

Language:

english

File:

PDF, 247 KB

english, 2001

20

Structural Basis of Prion Inhibition by Phenothiazine Compounds

Baral, Pravas Kumar, Swayampakula, Mridula, Rout, Manoj Kumar, Kav, Nat N.V., Spyracopoulos, Leo, Aguzzi, Adriano, James, Michael N.G.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.63 MB

english, 2014

21

A Mutation in the Catalytic Loop of Hsp90 Specifically Impairs ATPase Stimulation by Aha1p, But Not Hch1p

Horvat, Natalie K., Armstrong, Heather, Lee, Brian L., Mercier, Rebecca, Wolmarans, Annemarie, Knowles, Jacob, Spyracopoulos, Leo, LaPointe, Paul

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 1.14 MB

english, 2014

22

Catalytic Proficiency of Ubiquitin Conjugation Enzymes: Balancing p K a Suppression, Entropy, and Electrostatics

Markin, Craig J., Saltibus, Linda F., Kean, Melissa J., McKay, Ryan T., Xiao, Wei, Spyracopoulos, Leo

Journal:

Journal of the American Chemical Society

Year:

2010

Language:

english

File:

PDF, 3.02 MB

english, 2010

23

Interaction of a Peptide from the Receptor-Binding Domain of Pseudomonas aeruginosa Pili Strain PAK with a Cross-Reactive Antibody: Changes in Backbone Dynamics Induced by Binding †

Campbell, A. Patricia, Spyracopoulos, Leo, Wong, Wah Y., Irvin, Randall T., Sykes, Brian D.

Journal:

Year:

2003

Language:

english

File:

PDF, 191 KB

english, 2003

24

Mechanism for Recognition of Polyubiquitin Chains: Balancing Affinity through Interplay between Multivalent Binding and Dynamics

Markin, Craig J., Xiao, Wei, Spyracopoulos, Leo

Journal:

Journal of the American Chemical Society

Year:

2010

Language:

english

File:

PDF, 4.10 MB

english, 2010

25

Structure and Interactions of the Ubiquitin-Conjugating Enzyme Variant Human Uev1a: Implications for Enzymatic Synthesis of Polyubiquitin Chains †,‖

Hau, D. Duong, Lewis, Michael J., Saltibus, Linda F., Pastushok, Landon, Xiao, Wei, Spyracopoulos, Leo

Journal:

Year:

2006

Language:

english

File:

PDF, 533 KB

english, 2006

26

Effect of a Hydrophobic Environment on the Hydrogen Exchange Kinetics of Model Amides Determined by 1H-NMR Spectroscopy

Spyracopoulos, Leo, O'Neil, Joe D. J.

Journal:

Journal of the American Chemical Society

Year:

1994

Language:

english

File:

PDF, 1.02 MB

english, 1994

27

Dynamics and Thermodynamics of the Regulatory Domain of Human Cardiac Troponin C in the Apo- and Calcium-Saturated States †

Spyracopoulos, Leo, Gagné,, Stéphane M., Li, Monica X., Sykes, Brian D.

Journal:

Year:

1998

Language:

english

File:

PDF, 259 KB

english, 1998

28

Low-Temperature-Induced Structural Changes in the Apo Regulatory Domain of Skeletal Muscle Troponin C †,‡

Tsuda, Sakae, Miura, Ai, Gagné, Stéphane M., Spyracopoulos, Leo, Sykes, Brian D.

Journal:

Year:

1999

Language:

english

File:

PDF, 125 KB

english, 1999

29

Interaction of Cardiac Troponin C with Ca 2+ Sensitizer EMD 57033 and Cardiac Troponin I Inhibitory Peptide †

Li, Monica X., Spyracopoulos, Leo, Beier, Norbert, Putkey, John A., Sykes, Brian D.

Journal:

Year:

2000

Language:

english

File:

PDF, 229 KB

english, 2000

30

Calcium-Induced Structural Transition in the Regulatory Domain of Human Cardiac Troponin C †,‡

Spyracopoulos, Leo, Li, Monica X., Sia, Samuel K., Gagné, Stéphane M., Chandra, Murali, Solaro, R. John, Sykes, Brian D.

Journal:

Year:

1997

Language:

english

File:

PDF, 472 KB

english, 1997

31

NMR Studies of Ca 2+ Binding to the Regulatory Domains of Cardiac and E41A Skeletal Muscle Troponin C Reveal the Importance of Site I to Energetics of the Induced Structural Changes †

Li, Monica X., Gagné, Stéphane M., Spyracopoulos, Leo, Kloks, Cathelijne P. A. M., Audette, Gerald, Chandra, Murali, Solaro, R. John, Smillie, Lawrence B., Sykes, Brian D.

Journal:

Year:

1997

Language:

english

File:

PDF, 207 KB

english, 1997

32

Structure, Dynamics, and Thermodynamics of the Structural Domain of Troponin C in Complex with the Regulatory Peptide 1−40 of Troponin I †,‡

Mercier, Pascal, Spyracopoulos, Leo, Sykes, Brian D.

Journal:

Year:

2001

Language:

english

File:

PDF, 354 KB

english, 2001

33

Main Chain and Side Chain Dynamics of the Ubiquitin Conjugating Enzyme Variant Human Mms2 in the Free and Ubiquitin-Bound States †

Spyracopoulos, Leo, Lewis, Michael J., Saltibus, Linda F.

Journal:

Year:

2005

Language:

english

File:

PDF, 792 KB

english, 2005

34

NMR Studies of the Dynamics of a Bifunctional Rhodamine Probe Attached to Troponin C

Julien, Olivier, Mercier, Pascal, Spyracopoulos, Leo, Corrie, John E. T., Sykes, Brian D.

Journal:

Journal of the American Chemical Society

Year:

2008

Language:

english

File:

PDF, 354 KB

english, 2008

35

Structure of an Allosteric Inhibitor of LFA-1 Bound to the I-Domain Studied by Crystallography, NMR, and Calorimetry †,‡

Crump, Matthew P., Ceska, Thomas A., Spyracopoulos, Leo, Henry, Alistair, Archibald, Sarah C., Alexander, Rikki, Taylor, Richard J., Findlow, Stuart C., O'Connell, James, Robinson, Martyn K., Shock, A

Journal:

Year:

2004

Language:

english

File:

PDF, 556 KB

english, 2004

36

Dynamics of the RING Domain from Human TRAF6 by 15 N NMR Spectroscopy: Implications for Biological Function †

Markin, Craig J., Saltibus, Linda F., Spyracopoulos, Leo

Journal:

Year:

2008

Language:

english

File:

PDF, 547 KB

english, 2008

37

Energetics and Specificity of Interactions within Ub·Uev·Ubc13 Human Ubiquitin Conjugation Complexes †

McKenna, Sean, Hu, Jing, Moraes, Trevor, Xiao, Wei, Ellison, Michael J., Spyracopoulos, Leo

Journal:

Year:

2003

Language:

english

File:

PDF, 297 KB

english, 2003

38

Backbone Dynamics of Receptor Binding and Antigenic Regions of a Pseudomonas aeruginosa Pilin Monomer †

Suh, Jeong-Yong, Spyracopoulos, Leo, Keizer, David W., Irvin, Randall T., Sykes, Brian D.

Journal:

Year:

2001

Language:

english

File:

PDF, 178 KB

english, 2001

39

Stochastic Gate Dynamics Regulate the Catalytic Activity of Ubiquitination Enzymes

Rout, Manoj K., Hodge, Curtis D., Markin, Craig J., Xu, Xin, Glover, J. N. Mark, Xiao, Wei, Spyracopoulos, Leo

Journal:

Journal of the American Chemical Society

Year:

2014

Language:

english

File:

PDF, 3.26 MB

english, 2014

40

NMR Analysis of Type III Antifreeze Protein Intramolecular Dimer: STRUCTURAL BASIS FOR ENHANCED ACTIVITY

Miura, K., Ohgiya, S., Hoshino, T., Nemoto, N., Suetake, T., Miura, A., Spyracopoulos, L., Kondo, H., Tsuda, S.

Journal:

Journal of Biological Chemistry

Year:

2001

Language:

english

File:

PDF, 1.49 MB

english, 2001

41

Molecular Basis for Impaired DNA Damage Response Function Associated with the RAP80 E81 Defect

Anamika,, Markin, C. J., Rout, M. K., Spyracopoulos, L.

Journal:

Journal of Biological Chemistry

Year:

2014

Language:

english

File:

PDF, 3.37 MB

english, 2014

42

Noncovalent Interaction between Ubiquitin and the Human DNA Repair Protein Mms2 Is Required for Ubc13-mediated Polyubiquitination

McKenna, S., Spyracopoulos, L., Moraes, T., Pastushok, L., Ptak, C., Xiao, W., Ellison, M. J.

Journal:

Journal of Biological Chemistry

Year:

2001

Language:

english

File:

PDF, 791 KB

english, 2001

43

An NMR-based Model of the Ubiquitin-bound Human Ubiquitin Conjugation Complex Mms2{middle dot}Ubc13: THE STRUCTURAL BASIS FOR LYSINE 63 CHAIN CATALYSIS

McKenna, S., Moraes, T., Pastushok, L., Ptak, C., Xiao, W., Spyracopoulos, L., Ellison, M. J.

Journal:

Journal of Biological Chemistry

Year:

2003

Language:

english

File:

PDF, 892 KB

english, 2003

44

Covalent Inhibition of Ubc13 Affects Ubiquitin Signaling and Reveals Active Site Elements Important for Targeting

Hodge, Curtis D., Edwards, Ross A., Markin, Craig J., McDonald, Darin, Pulvino, Mary, Huen, Michael S. Y., Zhao, Jiyong, Spyracopoulos, Leo, Hendzel, Michael J., Glover, J. N. Mark

Journal:

ACS Chemical Biology

Year:

2015

Language:

english

File:

PDF, 2.09 MB

english, 2015

45

Structure of Cardiac Muscle Troponin C Unexpectedly Reveals a Closed Regulatory Domain

Sia, S. K., Li, M. X., Spyracopoulos, L., Gagne, S. M., Liu, W., Putkey, J. A., Sykes, B. D.

Journal:

Journal of Biological Chemistry

Year:

1997

Language:

english

File:

PDF, 668 KB

english, 1997

46

Thermodynamic Interpretation of Protein Dynamics from NMR Relaxation Measurements

Spyracopoulos, Leo

Journal:

Protein & Peptide Letters

Year:

2005

Language:

english

File:

PDF, 100 KB

english, 2005

47

Molecular Basis for Phosphorylation-dependent SUMO Recognition by the DNA Repair Protein RAP80

Anamika,, Spyracopoulos, Leo

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 2.00 MB

english, 2016

48

The Proteasome: More Than a Means to an End

Spyracopoulos, Leo

Journal:

Year:

2016

Language:

english

File:

PDF, 525 KB

english, 2016

49

Molecular basis for K63-linked ubiquitination processes in double-strand DNA break repair: A focus on kinetics and dynamics

Lee, Brian L., Anamika,, Mark Glover, J.N., Hendzel, Michael J., Spyracopoulos, Leo

Journal:

Journal of Molecular Biology

Year:

2017

Language:

english

File:

PDF, 1.45 MB

english, 2017

50

The Mechanism of Hsp90 ATPase Stimulation by Aha1

Wolmarans, Annemarie, Lee, Brian, Spyracopoulos, Leo, LaPointe, Paul

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.82 MB

english, 2016